Structural and mechanistic basis of penicillin-binding protein inhibition by lactivicins

Nat Chem Biol. 2007 Sep;3(9):565-9. doi: 10.1038/nchembio.2007.21. Epub 2007 Aug 5.

Abstract

Beta-lactam antibiotics, including penicillins and cephalosporins, inhibit penicillin-binding proteins (PBPs), which are essential for bacterial cell wall biogenesis. Pathogenic bacteria have evolved efficient antibiotic resistance mechanisms that, in Gram-positive bacteria, include mutations to PBPs that enable them to avoid beta-lactam inhibition. Lactivicin (LTV; 1) contains separate cycloserine and gamma-lactone rings and is the only known natural PBP inhibitor that does not contain a beta-lactam. Here we show that LTV and a more potent analog, phenoxyacetyl-LTV (PLTV; 2), are active against clinically isolated, penicillin-resistant Streptococcus pneumoniae strains. Crystallographic analyses of S. pneumoniae PBP1b reveal that LTV and PLTV inhibition involves opening of both monocyclic cycloserine and gamma-lactone rings. In PBP1b complexes, the ring-derived atoms from LTV and PLTV show a notable structural convergence with those derived from a complexed cephalosporin (cefotaxime; 3). The structures imply that derivatives of LTV will be useful in the search for new antibiotics with activity against beta-lactam-resistant bacteria.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • Drug Resistance, Bacterial
  • Microbial Sensitivity Tests
  • Penicillin-Binding Proteins / antagonists & inhibitors*
  • Penicillin-Binding Proteins / chemistry
  • Peptides / chemistry*
  • Peptides / pharmacology
  • Peptides, Cyclic
  • Protein Binding
  • Streptococcus pneumoniae / chemistry

Substances

  • Penicillin-Binding Proteins
  • Peptides
  • Peptides, Cyclic
  • lactivicin

Associated data

  • PDB/2BG1
  • PDB/2BG4
  • PDB/2JCH
  • PDB/2JE5
  • PubChem-Substance/24844195
  • PubChem-Substance/24844196
  • PubChem-Substance/24844197
  • PubChem-Substance/24844198
  • PubChem-Substance/24844199
  • PubChem-Substance/24844200
  • PubChem-Substance/24844201
  • PubChem-Substance/24844202
  • PubChem-Substance/24844203
  • PubChem-Substance/24844204
  • PubChem-Substance/24844205
  • PubChem-Substance/24844206